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S3.2.1 Representation of organic compounds

Types of Formulas and Interconversion of Representations

  1. Imagine you're in a chemistry lab, analyzing a small vial of an unknown organic compound.
  2. You’re tasked with figuring out its molecular structure.
  3. Where do you begin? You might start by examining its formula, but which one?
A single compound can be represented in multiple ways: as an empirical formula, molecular formula, structural formula, or skeletal formula.

Empirical Formula: The Simplest Ratio

Definition

Empirical formula

The empirical formula represents the simplest whole-number ratio of atoms of each element in a compound.

It tells you the relative proportions of atoms but not the actual number of atoms in a molecule.

Example

  • Glucose has the molecular formula C₆H₁₂O₆, but its empirical formula is CHβ‚‚O.
  • This means that, for every carbon atom, there are two hydrogens and one oxygen in the simplest ratio.

Key Features:

  • Provides no structural information.
  • Useful for understanding the relative composition of a compound.

Example

If a compound has 40% carbon, 6.7% hydrogen, and 53.3% oxygen by mass, its empirical formula can be determined. Divide each percentage by the atomic mass of the element:

  • Carbon:(4012.01=3.33
  • Hydrogen: 6.71.01=6.63
  • Oxygen: 53.316.00=3.33
  • Divide by the smallest value (3.33) to get the ratio:C₁Hβ‚‚O₁, or simplyCHβ‚‚O.

Tip

When calculating empirical formulas, ensure all percentages add up to 100%. If not, account for rounding errors or missing data.

Molecular Formula: The Actual Atom Count

Definition

Molecular formula

The molecular formula specifies the exact number of atoms of each element in a molecule.

Example

For glucose, the molecular formula C₆H₁₂O₆ shows that it contains six carbons, twelve hydrogens, and six oxygens.

Key Features:

  • Reflects the actual composition of a molecule.
  • Can be derived from the empirical formula if the molar mass is known.

Tip

To find the molecular formula from the empirical formula, divide the molar mass of the compound by the molar mass of the empirical formula. Multiply the subscripts in the empirical formula by this factor.

Common Mistake

Students sometimes confuse the molecular formula with the structural formula. Remember, the molecular formula does not show how atoms are connected.

Structural Formula: Connectivity of Atoms

Definition

Structural formula

The structural formula shows how atoms are connected in a molecule.

There are three main types:

  1. Full structural formula: Displays every atom and bond explicitly.
  2. Condensed structural formula: Groups atoms together to simplify the representation (e.g., CH₃CHβ‚‚OH for ethanol).
  3. Skeletal formula: Represents carbon atoms as vertices and omits hydrogen atoms bonded to carbons.

Example

  • Full structural formula: H–C–C–O–H (with all bonds shown explicitly)
  • Condensed structural formula: CH₃CHβ‚‚OH
  • Skeletal formula:A zigzag line with an "OH" group attached at the end.

Note

Skeletal formulas are especially useful for large organic molecules, as they simplify complex structures and make patterns easier to recognize.

Comparison of different formula types for organic compounds.
Comparison of different formula types for organic compounds.

Interconversion of Formulas

Being able to switch between molecular, structural, and skeletal formulas is a critical skill in organic chemistry. Let’s break this down with an example.

Example

  1. Molecular formula: C₃Hβ‚ˆO
  2. Condensed structural formula: CH₃CH(OH)CH₃
  3. Skeletal formula: A zigzag line with an "OH" group attached to the middle vertex.

Steps for Interconversion:

  1. Molecular to Structural: Use the molecular formula to determine the number of atoms and arrange them logically, considering bonding requirements (e.g., carbon forms four bonds).
  2. Structural to Skeletal: Remove all hydrogen atoms bonded to carbon and represent carbon atoms as vertices.

Common Mistake

Students often forget to include functional groups like –OH or double bonds in skeletal formulas. Always double-check that all functional groups are represented!

3D Models: Visualizing Molecular Geometry

While 2D formulas are useful, they don’t capture the true three-dimensional shape of molecules. This is where 3D models come in. These models represent the spatial arrangement of atoms, including bond angles and relative positions.

Key Features:

  • Ball-and-stick models: Show atoms as spheres and bonds as sticks, emphasizing connectivity.
  • Space-filling models: Represent the actual sizes of atoms, giving a sense of molecular volume.
  • Skeletal 3D models: Simplified 3D representations, often used for large molecules

Example

Methane (CHβ‚„)

  • Bond angles: Approximately 109.5Β° (tetrahedral geometry).
  • 3D representation helps visualize the symmetry of the molecule.
3D molecule of methane.
3D molecule of methane.

Reflection and Practice

Try these exercises to reinforce your understanding:

  1. Convert the molecular formula Cβ‚„Hβ‚ˆ into all possible structural and skeletal formulas.
  2. Build a 3D model of ethanol using a molecular modeling kit. Compare it to its 2D skeletal formula.
  3. Reflect: Which type of formula do you find most intuitive? Why?

Self review

Can you interconvert between molecular, structural, and skeletal formulas? What are the key differences between these representations?

Theory of Knowledge

How do different representations of the same molecule (e.g., skeletal vs. 3D models) influence our understanding of its properties? Can the choice of representation introduce bias in scientific communication?

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What role do 3D models play in understanding the properties of organic compounds compared to 2D representations?

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Note

Introduction to Organic Compound Representation

  • Organic compounds can be represented in various ways, each providing different information about the molecule.
  • These representations include:
    • Empirical formula
    • Molecular formula
    • Structural formula
    • Skeletal formula

Analogy

Think of these representations like different maps of a city: a street map, a public transport map, and a satellite view all show the same place but highlight different features.

Example

A single compound like ethanol can be represented as Cβ‚‚H₆O (molecular formula), CH₃CHβ‚‚OH (structural formula), or as a skeletal formula.

Note

Understanding these different representations is crucial for mastering organic chemistry.